Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs583055 chr15:65611000 G/C 6.82E-5 183 12.87 17.48 4.08 KM Plot
ESCA rs58467881 chr3:194384593 C/A 6.92E-6 178 13.35 12.6 3.47 KM Plot
ESCA rs58900911 chr8:120875562 G/A 2.97E-7 184 12.97 18.57 3.73 KM Plot
ESCA rs59037466 chr8:2444982 T/C 2.17E-9 178 13.35 14.57 2.93 KM Plot
ESCA rs59100020 chr8:2462543 C/G 1.88E-9 179 13.1 14.57 2.93 KM Plot
ESCA rs59112356 chr8:2441874 G/A 2.12E-9 178 13.35 15.57 2.93 KM Plot
ESCA rs59132860 chr9:90919670 T/G 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs59288932 chr9:90919538 A/G 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs59319586 chr3:125637753 G/A 7.58E-5 175 13.03 18.6 3.47 KM Plot
ESCA rs59354481 chr8:41351524 CT/C 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs59400135 chr19:40501596 G/GGGC 5.02E-5 183 13.57 12.83 3.73 KM Plot
ESCA rs59669799 chr8:120873725 C/CTGAA 4.64E-7 181 12.97 18.58 3.73 KM Plot
ESCA rs60165246 chr2:234165659 TTTTTGTTTTG/TTTTTG 9.0E-5 179 13.6 10.97 17.53 KM Plot
ESCA rs60337855 chr8:2457113 A/C 1.84E-9 179 13.22 14.15 2.93 KM Plot
ESCA rs61128083 chr8:2464733 A/C 2.11E-9 178 13.07 15.57 2.93 KM Plot